PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05250-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 326aa    MW: 36133.4 Da    PI: 4.5506
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05250-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.33.6e-2545110171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++ll+ +e+g+++ln++ + L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  TRIUR3_05250-P1  45 RYDSSLGLLTKKFINLLKGAEDGTLDLNKAVEIL---EV--QKRRIYDITNVLEGVDLIEKGLKNTIRWKG 110
                      6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.8E-2742111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-3145110IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.07E-1545108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.2E-2347110IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.17E-31122234No hitNo description
SuperFamilySSF1440741.88E-20124233No hitNo description
PfamPF164218.1E-24126231IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSKENEQKIE IENAQSEVGK GEISQGHHKE STTGPTKGDA ANNCRYDSSL GLLTKKFINL  60
LKGAEDGTLD LNKAVEILEV QKRRIYDITN VLEGVDLIEK GLKNTIRWKG FDMLLPKEVE  120
LQTSALKEEL DSSHDEECRL DEEIREAQEK LLALKLNKDK KKWLYLSKED ICKIPHLQGS  180
TRIAIHAPHG TCVEVPDPNA DMDICKDLES QEKHYQLLLR SSMGPIDCFL ISDHQGVSDP  240
EQVAQDNLDH ASTAGGSDAP RPVDDHPSQA PEKGEGDTVG KHTSEPSSTH ELMSGILKIV  300
LPDTDADADY WLASDVDATM TETWAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-2044110673PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239658.11e-171PREDICTED: transcription factor E2FC
TrEMBLM8AUI50.0M8AUI5_TRIUA; Transcription factor E2FB
STRINGBRADI5G01920.11e-172(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.34e-70E2F transcription factor 1